Protein Info for ABID97_RS09025 in Variovorax sp. OAS795

Annotation: type VI secretion system baseplate subunit TssG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF06996: T6SS_TssG" amino acids 22 to 340 (319 residues), 324.2 bits, see alignment E=4.3e-101 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 23 to 340 (318 residues), 327.5 bits, see alignment E=3.6e-102

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 80% identity to vpe:Varpa_3267)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>ABID97_RS09025 type VI secretion system baseplate subunit TssG (Variovorax sp. OAS795)
MKRDRETAAFGLQVLLVRLRKAPWNFGFTVLMRRLGALHTAQPRIGLASRPQQEAFRLGQ
TAALTFAPREIAEAVLPGETVPSPGTGSPPARHGNNPRVPTVRLFGLGLLGPNGPLPLHY
TELVRDRTENHHDSTLADFLDIFHHRYLTHMYRAWAQSQAAAGLDRKDDETFSRYIARLT
GHDPLEIHDSVLPSHARLAASTHLSREARNPDGLAATLARFFAVPVQLQEFVMHWIRIDD
EDQSHLGKARTSSVMGVGAIAGEVVPDRQNKFRLVLGPLHLDQYLRFTPQGKDLPLLVEW
VRGFVGYEFVWEVELRVRNDSAPPARLDDKEKLGWSTWLGGSQSAGLGVDARRPAANARD
YAVGMVFEPEEYMGTRYRTSAAARTAAC