Protein Info for ABID97_RS09000 in Variovorax sp. OAS795

Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1396 transmembrane" amino acids 7 to 32 (26 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 100 to 120 (21 residues), see Phobius details amino acids 586 to 609 (24 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 71 to 486 (416 residues), 436.3 bits, see alignment E=1.4e-134 amino acids 534 to 1209 (676 residues), 412.4 bits, see alignment E=2.3e-127 PF14331: IcmF-related_N" amino acids 262 to 482 (221 residues), 224 bits, see alignment E=3.3e-70 amino acids 547 to 593 (47 residues), 33.1 bits, see alignment (E = 5.9e-12) PF06761: IcmF-related" amino acids 645 to 974 (330 residues), 256 bits, see alignment E=9e-80 PF06744: IcmF_C" amino acids 1270 to 1374 (105 residues), 86.9 bits, see alignment 1.5e-28

Best Hits

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1396 amino acids)

>ABID97_RS09000 type VI secretion system membrane subunit TssM (Variovorax sp. OAS795)
MQYLKEFLAFVFSRQMLVFLAVALLCLVIWFVGPLLGVNGLRPLASVSVRVTFIVLLLAL
SVLWLLSWRLTPVALAAACLLVWHAGPLLAVGAARPLAPAWIRAAVIATLVLAYTAYWLY
RLLKAMQENQNFLDKYLSFGKDPAKEEPARAQLKTVAAAVDRALEQLKSLRARGGLGRLF
EGKRYLYELPWYMIVGTSEAGKTTAVRNSGLQFPVARKMGNAPRSTTLGAEDGTVHCDWW
FTNDAVLIDTAGRYVAQEKNSAADPAEWTGFLGLLRKHRARTPVNGVIVAISAEELLTMD
PAARTAHAGMVRDRLAELREELGIRFPVYVVVTKMDLLRGFGEYFSSLTSEGRTQVWGFT
LPSDGMKSGREADIAANRETLRVRVGTELALLKHRLAAGLRARLCEEFDVDRRRRLFALP
QELAGLATPLEQVLDEVFLDSRFDDTQRHNTLRGVYFTSGAQADVDLPANLDTLVQRLWR
SLCISQPGGAPDRSARNTDAVRGSPASVPSELAQQPKGRAPSEVAADAEQPIVSVAKAQV
AAIEGVDTSPNRGQQGFFIQDLLTKVIIPEAHLVRPNLRWIHRNRLLLLLGHSLAVVVFV
WLAFALVLSFDNNRQYLATVGQRAEALTAQVRGLFVNFKPTGVPDVLNGARELPGYAGLD
IDNPPVSFRYGLYTAPPILNASAETYAQLQEHMLLPPILQRMEAVLTQSLQARDAKTSYE
TLRAYKLLHDKERYMKDGGARDVRNWVFKDWETADSAAVFGGRASMVGHVEALFSGARPV
QSASLPKEALVRDAQHFLNSNTSTQRVYERAKTAMLPEAPQEFTLVRAVGPQVGTVFSRV
DGLPLEKGVPGLFTYEGYHDLFNKRLPEFVNSALEDDAWVMGRGGRLGGVDQKKTLLDDA
ARKLQSDPLLEDIRRQYLTEYAQQWESFLDSVRTVGGADTTGASLGFDLNVLRQLAAPDS
PLARLARAAARETTLSRPLVTRSQQDKSFLDKATDELNNQTAAIGKNFGIRPEERLERQI
VDNRFAALREVVTGQPDIALGSAGAAGAKPGLEAISGLLNEFYTLLVVADTALQAGSLPP
GGAEVGAKLKLEAGKLPAPFREVLSALAASGGDKVGQGSTDILRKQAQLQLDRIMGLMAM
QVSEPCKRGLEGRYPLAAVAQDASVEDFTLVFAVGGAADEFFTRYLMPFVDTSVRPWRYK
SPDSASAMVGAESVALGVAPAPATTGPTLLGELLKLLTQNGPNLEAFYRARQIRDLFFRE
AGGKKLAWKMEMRVLDLDPTINELMIDIDGQGQRYIHGPVQPITVNWPGPRGGSMAELGA
IPRISSATSSVTAVGPWALFRMFDKGRAIDTATPGRQTIEYSFDGRKALVDISSGTQPNP
LNSDLLRGFRCPGRAG