Protein Info for ABID97_RS08945 in Variovorax sp. OAS795

Annotation: type VI secretion system ATPase TssH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 904 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 12 to 876 (865 residues), 1212 bits, see alignment E=0 PF00004: AAA" amino acids 233 to 365 (133 residues), 43.5 bits, see alignment E=2.2e-14 amino acids 626 to 710 (85 residues), 33 bits, see alignment E=3.9e-11 PF17871: AAA_lid_9" amino acids 373 to 463 (91 residues), 95.8 bits, see alignment E=7e-31 PF07724: AAA_2" amino acids 620 to 787 (168 residues), 178.9 bits, see alignment E=4.3e-56 PF07728: AAA_5" amino acids 625 to 745 (121 residues), 38.6 bits, see alignment E=5.3e-13 PF10431: ClpB_D2-small" amino acids 793 to 865 (73 residues), 47.2 bits, see alignment E=9.6e-16

Best Hits

KEGG orthology group: K11907, type VI secretion system protein VasG (inferred from 66% identity to rpf:Rpic12D_1684)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (904 amino acids)

>ABID97_RS08945 type VI secretion system ATPase TssH (Variovorax sp. OAS795)
MAIARRVLFGKLNPTLFRAAESATAFAKLRGNPYVELTHWIHQLWQLSDSDFHRICRYYQ
IEAQAMERDLALALSALPAGATSLSDFSHHIASAVERAWILSSLEFGDNHIRGAWLLTAL
AQTPELRAVLIGISPQFRKIPADQASDALAAVIAGSPEEREGPYEGAGLGAAVPGEASGA
VSDASQEGSALTKYCVDLTERARSGKIDPVIGRAYEIRTMVDILLRRRQNNPLLTGEAGV
GKTAVVEGLALAIAASEVPPALRKVRLLSLDVGALLAGASMRGEFEARLKSLLTEAEQSP
EPIILFVDEVHALVGAGGQAGTGDAANLLKPALARGTLRTVGATTWTEYKRHIEKDPALT
RRFQVLQVMEPEEASAVEMVRGLVPTFMRHHGVAVLDEAVRAAVVLSHRYIPSRQLPDKA
ISLLDTACARVAMSLHTPPLAVENLRQRLAGLLTELELLAQEGVVAHGASERSERVAAAA
ARMDQTRADLEIQEARWQDELSLVQQILVQRVLENDGAIKNQERNPSPAPSAELAALEAA
LIERQQDHPLIFPQVDEAVVASIIADWTGVPVGRMVRDEVAAVFELHATLDRRVIGQGTA
LAAIAERVQTARARLTDPGKPVGVFLLVGPSGVGKTETALALAEAMYGGEQNLITINMSE
FQEAHTVSTLKGSPPGYVGYGEGGVLTEAVRRKPYSVILLDEVEKAHPDVHEIFYQVFDK
GWMEDGEGRRIDFRNSTILLTSNTGSELIANLCEDPALIPDTAGLREALQPLLRKVFPAA
FIGRLSVVPYLPLEEAALAQIVALHLGRVVARMREQHGIALTCTPALAAHIIAQCGTHET
GARRLIGFIEQRLLPVLARHWLEALQGKRQIVRINADAGDTASEHGSLQASEGGDAIACQ
IEYA