Protein Info for ABID97_RS07900 in Variovorax sp. OAS795

Annotation: valine--tRNA ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 965 transmembrane" amino acids 503 to 524 (22 residues), see Phobius details TIGR00422: valine--tRNA ligase" amino acids 17 to 946 (930 residues), 1075.9 bits, see alignment E=0 PF00133: tRNA-synt_1" amino acids 33 to 632 (600 residues), 449.4 bits, see alignment E=2.9e-138 PF09334: tRNA-synt_1g" amino acids 63 to 112 (50 residues), 28.6 bits, see alignment 1.6e-10 amino acids 362 to 573 (212 residues), 22.9 bits, see alignment E=8.9e-09 PF08264: Anticodon_1" amino acids 688 to 837 (150 residues), 132.6 bits, see alignment E=2.7e-42 PF10458: Val_tRNA-synt_C" amino acids 902 to 964 (63 residues), 68.4 bits, see alignment 1.3e-22

Best Hits

Swiss-Prot: 69% identical to SYV_CUPNJ: Valine--tRNA ligase (valS) from Cupriavidus necator (strain JMP 134 / LMG 1197)

KEGG orthology group: K01873, valyl-tRNA synthetase [EC: 6.1.1.9] (inferred from 79% identity to aav:Aave_1992)

Predicted SEED Role

"Valyl-tRNA synthetase (EC 6.1.1.9)" (EC 6.1.1.9)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.1.1.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (965 amino acids)

>ABID97_RS07900 valine--tRNA ligase (Variovorax sp. OAS795)
MSESTTPSAQPGLDSLSKSFEPAAIEAHWGPEWEKRGYAKAGFRGTQQPREGADSFAIQL
PPPNVTGTLHMGHAFNQTIMDSLARYHRMKGDNTLWVPGTDHAGIATQIVVERQLQEQKI
SRHDMGPTPAEARKNFVAKVWEWKEKSGNTITGQMRRMGDTVDWSREYFTMDDDLSKVVT
QTFVSLYEEGLIYRGKRLGNWDPVLKTSVSDLEVESEEEDGSLWHIAYPLEDGSGTLTVA
TTRPETMLGDTAVMVHPEDDRYKHLIGQRVKLPLVDRLIPIIADDYVDKAFGTGVVKVTP
AHDYNDYAVGQRHKLEVIGILTLDATINDNAPEKYRGMDRFVARKAIVADLEALGLLVEV
KKHKLMVPRCARSGAIVEPMLTDQWYVAMTRPGADGTSIAQKAIDVVKTGEVRFVPENWV
NTYNHWMENIQDWTISRQLWWGHQIPAWYDDEGNVYVAHDEAEARAKAPGKTLRRDEDVL
DTWYSSALVPFSSLGWPEKTQDLALYLPSSVLVTGYDIIFFWVARMIMMTKHFTGKVPFK
DVYIHGLVRDAQGKKMSKSEGNVLDPVDLIDGIALPELLDKRTQGLRKPETAPAVRKNTQ
KEFPEGIPAFGADALRFTFASLASLGRSINFDSKRCEGYRNFCNKLWNATRFVLMNCEGQ
DCGLREHTKEECAVGGPAHGYLKFSRADFWIASQLQRVEAEVAKGFEEYRLDNVANAIYQ
FAWDEFCDWYLEIAKVQIQTGDDAQKRATRRTLIRTLEALLRLAHPVIPFITEELWQKVA
PVAGRAGESIMVAAYPQSQPAKIDEAAEAHVARLKALVDACRTLRGEMNVSPALRLPLYA
LADDAEGAAFLRDAAPVLQALAKLKEVKVFDDEASWSAAAEAAPVAVVGTARLCLHMEID
KAAERARIGKEIARIEGEILKVNGKLGNEAFVAKAPPAVIEQERKRLADFSIMLERLRDQ
LVRLG