Protein Info for ABID97_RS07010 in Variovorax sp. OAS795

Annotation: porin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13609: Porin_4" amino acids 2 to 336 (335 residues), 217.9 bits, see alignment E=3e-68 PF00267: Porin_1" amino acids 55 to 327 (273 residues), 24.3 bits, see alignment E=2.1e-09

Best Hits

KEGG orthology group: None (inferred from 60% identity to vpe:Varpa_1171)

Predicted SEED Role

"Outer membrane porin protein 32 precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (370 amino acids)

>ABID97_RS07010 porin (Variovorax sp. OAS795)
MAALAVAGVASAQSSVTLFGVVDASISHYETSSRSLITGSSFKQSQTVLANSGYNTSRLG
FRGTEDLGGGLAASFWLESPMSNDDGASSIGISFSRRSTVSLSGGFGEVRLGRDYTPTFW
NDTVFDPFGTNGVGTNVINSSHSAILTGLGLPSDSNYVRANNTIGYFLPPNLGGFYGQVQ
YGLHENVKTSGVQVSKTGRYVGGRVGYANGPLDVGLAYGKSDVFNNGAGTGIDARTLNLG
ASYDFGVVKLFTELSRVTNEFYASQLGSEKIGLNGFLIGATAPVGAGLIRVAYSQAKANF
DGNDDPRSRKFAIGYVHNLSKRTALYTTVARVANKNGAPITVGGAPRFSTAAGYEPRNST
GYDFGIRHAF