Protein Info for ABID97_RS06865 in Variovorax sp. OAS795

Annotation: galactofuranose ABC transporter, permease protein YjfF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 29 to 52 (24 residues), see Phobius details amino acids 59 to 101 (43 residues), see Phobius details amino acids 110 to 133 (24 residues), see Phobius details amino acids 141 to 164 (24 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 262 to 282 (21 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 315 to 335 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 59 to 327 (269 residues), 132.6 bits, see alignment E=7.8e-43

Best Hits

Swiss-Prot: 55% identical to YJFF_ECOLI: Inner membrane ABC transporter permease protein YjfF (yjfF) from Escherichia coli (strain K12)

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 95% identity to vap:Vapar_1050)

MetaCyc: 55% identical to galactofuranose ABC transporter putative membrane subunit YjtF (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-491 [EC: 7.5.2.9]; 7.5.2.9 [EC: 7.5.2.9]

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>ABID97_RS06865 galactofuranose ABC transporter, permease protein YjfF (Variovorax sp. OAS795)
MSAVIETAPSPQPSPARGRGGKTGINPKYLPLTATISLFMLMATLGSVFYDGFFSAQVFL
NLLIDNAFLIVVAVGMTFVILSGGIDLSVGSVIALTTMVSASLVEKHGWSPAVVIPLVLA
MGTAFGAFMGLLIERFRLQPFIVTLAGMFLARGLCYLISIDSISITNAFYSEVSQIRIPM
WGEASLSISAVIAIVVLLAAVFIAHCTPFGRAVYAIGGSEHSAMLMGLPVRRTLVGVYTL
SGFCSALAGVIFTFYMLSGYGLHALGLELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLG
IIQTLISFDGTLSSWWTRIVVGALLFVFCLLQRFFTSRAPRR