Protein Info for ABID97_RS06855 in Variovorax sp. OAS795

Annotation: sugar ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 506 PF00005: ABC_tran" amino acids 25 to 178 (154 residues), 104.8 bits, see alignment E=5.7e-34 amino acids 283 to 436 (154 residues), 83.9 bits, see alignment E=1.7e-27

Best Hits

Swiss-Prot: 42% identical to RGMG3_BURCM: Putative ribose/galactose/methyl galactoside import ATP-binding protein 3 (Bamb_4447) from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)

KEGG orthology group: K02056, simple sugar transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 95% identity to vpe:Varpa_1117)

Predicted SEED Role

"Predicted L-arabinose ABC transport system, ATP-binding protein" in subsystem L-Arabinose utilization

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (506 amino acids)

>ABID97_RS06855 sugar ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MSQSSISPVLELRGIHKQFGGIPVLRDVQLRLYPGEIHALMGQNGAGKSTLIKVLTGVLP
SSGGETRLDGQAIHPASPLDAQKLGISTVYQEVNLCPNLSVAENVFAGRYPRCGAAQGFR
IDWTAVNRRAAELLARIGLDIDVTRLLSSYSVAVQQLVAIARALGVSSKVLILDEPTSSL
DDDEVEKLFEVLRRLRGEGLAIVFVTHFLNQMYAVSDRITVLRNGQWVGEWKAADLGPQA
LIAAMLGRELAAQSARPAALPAFDETATALLQTEGLGQAGQLQATDLRVRAGEVVGIAGL
LGAGRTELARLLFGLESPDRGVLKIDGRAVSFSNPADAIREGLALCPEERKTDGIVAELS
VRENIALALQARLGTRKFLSHAEQTTMAERFVASLGIKTASVETPIGLLSGGNQQKAMIA
RWLATEPRLLILDEPTRGIDVAAKQEIMEEILRLARAGMAVVFISSEISEVVRVAHRIVV
LRDRRKVGELPGGATEDEVYEMIAAA