Protein Info for ABID97_RS06560 in Variovorax sp. OAS795

Annotation: IS481 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 PF13011: LZ_Tnp_IS481" amino acids 1 to 71 (71 residues), 50 bits, see alignment E=1.3e-16 PF13518: HTH_28" amino acids 13 to 64 (52 residues), 32.5 bits, see alignment 2.5e-11 PF13565: HTH_32" amino acids 41 to 107 (67 residues), 36.8 bits, see alignment E=1.7e-12 PF00665: rve" amino acids 131 to 246 (116 residues), 62.4 bits, see alignment E=1.6e-20 PF13683: rve_3" amino acids 235 to 300 (66 residues), 68.1 bits, see alignment E=1.5e-22

Best Hits

KEGG orthology group: None (inferred from 81% identity to del:DelCs14_3517)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (316 amino acids)

>ABID97_RS06560 IS481 family transposase (Variovorax sp. OAS795)
MNTHKHARLTFARRIEMVKQMTLEGLDAVRAAAAHGVTAPTARKWLGRYLAGGEAALADA
SSRPTRSPRAIDAGKALLIVELRKRRMLQARIARSVGVSESTVSRVLARAGMSKLSDLVP
VEAVVRYEHEAPGDLLHIDTKKLGRIVRPSHRVTGNRRDSVDGAGWETLFVAIDDHARLA
FTAMHPDEKQAQAVLFLRNAVAYYARLGIIVKRLLTDNGPAFRSREFRATCTELGIKHSF
TRPYRPQTNGKAERFIQSALREWAYGWTYQNSAHRTDALASWQHHYNWHRPHSGIGGVAP
ISRINSSRNNLLTLHS