Protein Info for ABID97_RS06490 in Variovorax sp. OAS795

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 387 to 410 (24 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 486 (24 residues), see Phobius details amino acids 540 to 558 (19 residues), see Phobius details amino acids 869 to 887 (19 residues), see Phobius details amino acids 894 to 914 (21 residues), see Phobius details amino acids 919 to 938 (20 residues), see Phobius details amino acids 970 to 991 (22 residues), see Phobius details amino acids 998 to 1024 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1024 (1022 residues), 1025 bits, see alignment E=0 PF03176: MMPL" amino acids 203 to 487 (285 residues), 27.4 bits, see alignment E=1.7e-10

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 97% identity to vap:Vapar_0971)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1049 amino acids)

>ABID97_RS06490 efflux RND transporter permease subunit (Variovorax sp. OAS795)
MNISELCIRRPAMTVLLSAAVVVAGIFAYFSIPVAALPSYNTPVINVNAQLPGASPDTMA
SSVALPLEKQFSTIPGLQTISSVNTQGVSSITLEFVSSRDIDAAAVDVQAALLRAQRQLP
QELTQLPSYRKVNPADAPVLFIALISPSMNPAELNDYAENLISPTLSTIDGVAQVGVYGR
KAFAVRIKANADLLNARNITLDELARAVNSANANTPVGTLDGPRQTLTIQANRQLTKAED
FAKLIVGQRNGAPVRLDEVATIEDSFESVKTASSFNGQSSISLAVQRQPNANTVEVVDAV
RALIPRFKAELPQSVEIHMVNDRSLSIREAVHDVQLTLLGTIALVVLVIFLFLHRLVATL
IPAATIPISLIGAVALLYAFGYSLDNVSLLGITLAVGLVVDDAIVVLENIMRYVEKGMEP
FAAALRGAREVGFTIISISISLVAVFIPIFFMPGVIGLLFHEFAVVVALAVLVSAVVSLT
LVPMLASRLLKHVPRKEGVLDHEEEHPEPGTAIGRAFERGYRWVHGSYMRTLDWTLGHRT
LMLLMAGGTFIVTAWLFVSIPKGFFPEEDIGQIQITTEAAEDISFTAMNALQERVAASLQ
ADPSVAYVSSFVGVGGPTATQNSGRLFAVLKPRSERPKMAAVLESLRQRFREIPGIAVYM
QPVQNLRLGGRQSKARFQYTLQSVNAGEMVPWATRLMERMRADPAFRDVTSDSQNRGLQA
TLEVDRDKAGVLGVAVGDLRTALYNAYGDRQIGSIYGASNTYQVILSASDNDRQFEDDMS
RLSVRSTTGRLVPLSAFSTVKRTVGPTSVNHQGQLQAVTVSFNLAPDVPLGNATAKIDQF
KEELKMPPSIITTYGGDAAVFQSSQSSQAVLLVLAVLVIYVLLGVLYESYIHPLTILAGL
PSAAVGALLSLKLFGFDLTLIATIGILLLIGIVKKNAIMMIDFALDAQRTEGMKPVDAIR
EACRLRFRPILMTTLAALMGALPLALGLGAGAELRQPLGVAVVGGLIFSQVITLYITPAI
YLALDRYSGTGPMVELPGEAKAEVSHSPA