Protein Info for ABID97_RS06430 in Variovorax sp. OAS795

Annotation: cytochrome c biogenesis protein CcsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 38 to 56 (19 residues), see Phobius details amino acids 62 to 82 (21 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 173 to 193 (21 residues), see Phobius details amino acids 212 to 229 (18 residues), see Phobius details amino acids 241 to 260 (20 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 57 to 262 (206 residues), 82.7 bits, see alignment E=1.5e-27

Best Hits

KEGG orthology group: None (inferred from 95% identity to vap:Vapar_0961)

Predicted SEED Role

"CcsA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>ABID97_RS06430 cytochrome c biogenesis protein CcsA (Variovorax sp. OAS795)
MILAIPSPLAVALGIATAAAYGFAAAAGARLSRKTTQWALGLAWLLHAAVLGHGLVGSQP
HFGFAPALSVTAWLVLTVYAVESSMYPQMKVRRALAWLGAAAVLLGVLFPGTPLHVSASP
WLPLHLALGIASYGLFGAAVVHAWLITRAEKQIRLATEPQAGLPLLTLERLTFRFVMAGF
VLLSATLLAGLLFSETLYGASFRGWKWDHKTVFSVLAWMSFAVLLIGRVRFGWRGRTARR
VLYAGSVLLLLAYVGSRFVLEVVLARGAS