Protein Info for ABID97_RS06325 in Variovorax sp. OAS795

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 transmembrane" amino acids 159 to 185 (27 residues), see Phobius details amino acids 200 to 217 (18 residues), see Phobius details amino acids 228 to 252 (25 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 290 to 315 (26 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details PF07730: HisKA_3" amino acids 417 to 462 (46 residues), 24.8 bits, see alignment 2.7e-09

Best Hits

KEGG orthology group: None (inferred from 84% identity to vap:Vapar_0940)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (596 amino acids)

>ABID97_RS06325 histidine kinase (Variovorax sp. OAS795)
MAVAAAVGAAPADTPIELRRGTVTTTIDGVTEKAPVELSYHWDRQHAGRPGLAEFDLPFT
LASEPATPWGIFIPRAGNVLEVRLDGALLQVYGDLARGNGADYAKAPIYVPVPGHLLKAG
DNRLQIRIRADSARRAGLSRVTIGPATPVRTELFESAYAWRFTGSVLLTAFSLIVGGIAL
ALWLTQVDAGAPGSGRRDGVYFWAALAEFCWALRVADGVIAEPPLPWPAWGVLMAACYAG
WAASAMMFCYHLANWESSARMRWLRWPVASVVAGTIAASAMALYREEPYWLTGWLAAEIV
FIALFVGAFAVATIVQPNTGRLLVAAAALVTLGFGTRDWLVIRLSDAYGETTWVRYSSVF
FGIALLLIVLQRFRAATIEARGWVATLAERVAQRERELASTFAALEQVARDQARTHERER
ILRDMHDGVGSHISSAIRQLQSGQASSDELLRTLRDSLDRLKLSIDSIHLPPGDVGALLA
ALRYRLEPRLAAAGIRLEWAVDEVPTVKRLDAQGMRQLQFLLFEAISNVLQHAHAKSLRI
EADAPAGAVHLRVIDDGQGFDASRVPRALLERAAAVGVQLALESRPGRTVVQLGFG