Protein Info for ABID97_RS06150 in Variovorax sp. OAS795

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 PF02899: Phage_int_SAM_1" amino acids 17 to 99 (83 residues), 48.2 bits, see alignment E=1.1e-16 PF00589: Phage_integrase" amino acids 141 to 310 (170 residues), 141.1 bits, see alignment E=3.2e-45

Best Hits

Swiss-Prot: 44% identical to XERC_VIBVU: Tyrosine recombinase XerC (xerC) from Vibrio vulnificus (strain CMCP6)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 89% identity to vap:Vapar_0902)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>ABID97_RS06150 tyrosine recombinase XerC (Variovorax sp. OAS795)
MATSTETAGMAETPPWVEKYLAYVRVERRLAPRTVELYAIHLQALAVNAAEAGLPLDRVQ
TAHIRRWMAQLHGAGREPRGIALVLSCWRSFYRWLGNEGLVGFNPVKDVHAPKAARPLPK
ALAVDDAVRLAEMYDPEADPWTEARDSAIVEVLYGCGLRVSELTGLDAQASHTARGWVDL
EALEANVLGKGSKRRLVPIGGKAAEALRDWLAVRGDCAALATAGLRDAAGAAALFISSKG
VRMSSQAVWKMLRERSLKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHANISTT
QIYTRLDFQHLAKAYDAAHPRAQARPEGARSKPRKDNDDTQ