Protein Info for ABID97_RS05750 in Variovorax sp. OAS795

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 224 to 244 (21 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 68 to 217 (150 residues), 30.7 bits, see alignment E=7.1e-11 PF13506: Glyco_transf_21" amino acids 77 to 223 (147 residues), 27 bits, see alignment E=7.8e-10 PF13632: Glyco_trans_2_3" amino acids 89 to 203 (115 residues), 31 bits, see alignment E=5.7e-11 PF02709: Glyco_transf_7C" amino acids 161 to 202 (42 residues), 23.7 bits, see alignment 7.9e-09

Best Hits

KEGG orthology group: K07011, (no description) (inferred from 89% identity to vap:Vapar_0771)

Predicted SEED Role

"dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL" in subsystem dTDP-rhamnose synthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (251 amino acids)

>ABID97_RS05750 glycosyltransferase (Variovorax sp. OAS795)
MPAPSPFQPPITVSIVSHGQLALVLPLLEQLDRFSRSSTAKVVLTINIPEPDLLAGRTWG
FAVERIDNASPKGFGANHNQAFGHCETPWFLVLNPDIRLDGDVLAPLVAQARPDAGLLTP
RILEPGKSTPEQHRAIITPLEIVTRRKPGYARPAVPDWIPGLFMLFRSRAYREIGGFDER
FFMYGEDFDICARTRLAGWQLQVGEDLLARHEAQRASRSSRKHLYWHVTSLLKVWSSAVF
WRYLRARPRQS