Protein Info for ABID97_RS05745 in Variovorax sp. OAS795

Annotation: acyltransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 683 transmembrane" amino acids 49 to 69 (21 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 205 to 227 (23 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 297 to 317 (21 residues), see Phobius details amino acids 329 to 348 (20 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 24 to 346 (323 residues), 106.3 bits, see alignment E=1.8e-34 PF19040: SGNH" amino acids 424 to 657 (234 residues), 83.8 bits, see alignment E=1.6e-27

Best Hits

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_0770)

Predicted SEED Role

"O-antigen acetylase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (683 amino acids)

>ABID97_RS05745 acyltransferase family protein (Variovorax sp. OAS795)
MTTTSSPTSPQEHAHLVHPKYRPDIDGLRAVAVLSVLGYHAFPQWIKGGFIGVDIFFVIS
GFLITTIILGSFEGDGFSYREFYARRVKRIFPALVLVLAATFAFGWYSLLPNEWEQLGKH
VAAGAGFVSNFAFWNEAGYFDNAAETKPLLHLWSLAIEEQFYIFWPVLIGLAWKRKWRVL
AVVGIVAAMSFLLNVSTIHSHRTAAFYSPLSRFWELMIGGMLAYMRLHRPLPKPGWGRHA
QSIAGLVLIGLGLAYIRGGKAFPGFWAILPTLGAFYCIAAGPTGVLNRYVLASKPMVWVG
LISYPLYLWHWPLLVYARIVEGDVPSNGLRALMLLAAFVLAWLTYRFVERGLRRSENNAV
VPVLVAVMVGFVVLGTLAATRYYVGRHSDPYFNKTAAAAKDWGYPDGLSPIKVDGEVLQQ
IGHGKRRVLFFGDSHIEQYGPRAVELAKIAPDTLDSISFATWGACPPIPNVVDEKNNLCG
ERRDGAMRLAISDKFDAVVFGGCWNCYFSETGKANAANAEADRYYYSDGKTRRRFMGGGG
VDFALNMLEAVMTNLAKHKQVYLVLDNPVGEGYGPEEFIKGGRLGNMSVAQMSPTTPWVP
AQKALHERMRQIAIRSGAIVIDPIPTLCRGDQCTRADADATPIYKDAGHLRAEYVRKFAT
YIDVAMSTQKPPQTGAAPPPPSR