Protein Info for ABID97_RS05200 in Variovorax sp. OAS795

Annotation: DotU family type IV/VI secretion system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 69 (23 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details PF09850: DotU" amino acids 4 to 210 (207 residues), 81.9 bits, see alignment E=2.5e-27

Best Hits

KEGG orthology group: None (inferred from 77% identity to vpe:Varpa_0590)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>ABID97_RS05200 DotU family type IV/VI secretion system protein (Variovorax sp. OAS795)
MARLLDCFSAFLSYGLALDASNAAGRPTLSHDGAQQQARRLLDAARAAAAAAGTPAAQVE
SAAFAMVAWMDEILARHPDAATSPAPLQAQLFNSNNAHSEFFHHLSSLTAADDEVREVYW
HALVHGFKGQYYFEDGDQGELGKLKDLHGRQLRLRPLPLGSLVQDRITPQPYRAPDPPGS
HDPRRRDRALLRAGGALALLVPLVVLLWWLWLAGPPAVEPNLGQRIEQHLQTYACADLAA
TAGKDGRLRVSGFVSLPEDVKRVEREVAAMPGVGSPAFDIDLRLWPHCEVFAILKPYQLR
NRDKAYGLDVEAPTARNGQLREGDSVRMLVAAPNHDSYLWVDYYTADGAVMHLNAGQVAT
RLRAGEKLELGREIPSSWLVGPPFGSVLVTVLSSPMPFNETADRPPFELASAYLLRLREA
LAANKGGDRLIADFVSLETAAR