Protein Info for ABID97_RS05075 in Variovorax sp. OAS795

Annotation: DUF2169 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 PF09937: DUF2169" amino acids 33 to 292 (260 residues), 218.5 bits, see alignment E=2.7e-68 PF00805: Pentapeptide" amino acids 545 to 577 (33 residues), 28.1 bits, see alignment (E = 2.4e-10) amino acids 578 to 615 (38 residues), 32.8 bits, see alignment (E = 7.8e-12) amino acids 608 to 645 (38 residues), 20.6 bits, see alignment (E = 5.2e-08) amino acids 674 to 707 (34 residues), 24.7 bits, see alignment (E = 2.7e-09) amino acids 683 to 720 (38 residues), 23.3 bits, see alignment (E = 7.7e-09) amino acids 750 to 784 (35 residues), 24.1 bits, see alignment (E = 4.2e-09) amino acids 779 to 818 (40 residues), 27.4 bits, see alignment 3.9e-10 amino acids 791 to 826 (36 residues), 35.5 bits, see alignment (E = 1.1e-12) amino acids 811 to 839 (29 residues), 22.9 bits, see alignment (E = 1e-08)

Best Hits

KEGG orthology group: None (inferred from 57% identity to vpe:Varpa_0569)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (864 amino acids)

>ABID97_RS05075 DUF2169 domain-containing protein (Variovorax sp. OAS795)
MQVLKPQALGLSTRPIEFRKRFGLSISACLHLPFAQGERGTLWAEQSMWSFLSKEMAQPL
IDEGVAKLTPEFLVHGKAFPPPDRPNGCAVRARFGTKEKTLLVLGDRHWDGARPSPAQPF
AEMPLDWSRAYGGADFPSNTGGRGRQKIDGVAWLPNIELPHDRLLRPDQAIAPAGMGALD
LMHPQRVQYRGTYDADYLKQHAPGFAPDTDWRYFNLAPADQWMGGPLAGDEPFSFENMHP
EKRMIEGRLPGMRARVFVGYRMVAGEPKVREVPLRLTTVWFFPHAERCIAIFQGLAEVGT
DDGSDVVSLMGAVERAGEVRPDAHYLDAAAKRADPKMGPIYAIVDSDLLPEGVSTLDPDV
EAAKAPFGTQGLQGEAQYRRAEMDVAFAREKVIAMGKDPDALGIRMPPREKVPVGDELPP
YLEKKMKEAEAQQWAAVEDAVTAIERAMAMSEAHKIDIAKAQHRGPPRYDPDRHMAEMRA
QLAVGTRPLDLAPLFPKLCRIEDAHRAGYLQSAHMQPPAFAMPAGEAAKLRDEMARAVAA
GIKFFAGIDFTGADFSGLDLREVNFEGAWLESADLRNANLSGANLAGAVLAHANLEGVIA
FGARFSKANLGKAVLARGVFDGSDFSDAVLMRCAFAGTQMRHANFAKANLLETTWGDADW
TGATLSGQVFYKLDLKGMRWPEADLSVCNFIESDLSGVDMHGAKLENATFATSKLDGARM
MAAQCTGAVAVKGSSLAAADMSQANLRNFNFGASDMRGARLVRAVLDGANLCEAGLQGAD
LRLASAKGALMRKAVCTNALLSGVDFSGAIFQSADLRGADLRRSNLFGADLGRVRLDGST
RFDGALLKRARTWPRLTPEQQAVA