Protein Info for ABID97_RS05050 in Variovorax sp. OAS795

Annotation: type VI secretion system baseplate subunit TssG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 359 PF06996: T6SS_TssG" amino acids 22 to 328 (307 residues), 319.5 bits, see alignment E=1.2e-99 TIGR03347: type VI secretion protein, VC_A0111 family" amino acids 22 to 328 (307 residues), 311.4 bits, see alignment E=3e-97

Best Hits

KEGG orthology group: K11895, type VI secretion system protein ImpH (inferred from 91% identity to vap:Vapar_0528)

Predicted SEED Role

"Uncharacterized protein ImpH/VasB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (359 amino acids)

>ABID97_RS05050 type VI secretion system baseplate subunit TssG (Variovorax sp. OAS795)
MRDTPDSVAGRVDGALRAWSAEPWSFDYFAVMRRLESVAGTTPRWGRALLPSAEPVRVGQ
EPSLSFAPASFSRFEPATADSPPRLRQHFFSYVGPNGPLPVHLSDFIRERSLNHGDPTWL
AFLDSFLHRFSLHFYRAWAQSRPAVALDRPGEDRFRLQVGALVGMGMPGRIGRDEIHDDA
RLHFSGWLARRVHNAESVESVLCSYFGVPVTLERWVGHWMSLPAGELTRLGQGESSRSMG
MGAMLGTRAWDRQHRVRLHVGPLSLDQYRMFLPIGDAQPVLQRWMQQLLGDELEWDAQLA
LQGAQVPPTRLGQAKGNAPRLGWIAWLGQRPRAKDAADVRIGSRPMAARAAQATVGAAA