Protein Info for ABID97_RS04995 in Variovorax sp. OAS795

Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1199 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 463 to 483 (21 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 15 to 1197 (1183 residues), 1220.2 bits, see alignment E=0 PF14331: IcmF-related_N" amino acids 209 to 469 (261 residues), 310.2 bits, see alignment E=1.6e-96 PF06761: IcmF-related" amino acids 521 to 831 (311 residues), 308 bits, see alignment E=1.3e-95 PF06744: IcmF_C" amino acids 1075 to 1180 (106 residues), 100.9 bits, see alignment E=6.8e-33

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 97% identity to vap:Vapar_0516)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1199 amino acids)

>ABID97_RS04995 type VI secretion system membrane subunit TssM (Variovorax sp. OAS795)
MIKKIFGFLFSPLLLTILALVIVSLLIWWIGPLVKIGAWAPLESELVRALLIGAIVLIVV
LRALYRRWRTRRASQHLTDGLMKAPAAKTDAPVNGEQKILDTRFSEAVATLKQMRLHAAG
KKPGWRDWLSISGGSYLYDLPWYVFIGAPGAGKTTALVNSGLSFPLAEKFGPGAIRGVGG
TRNCDWWFTDEAVLIDTAGRYTTQDSHQSEDKSAWEGFLGLLKKARPRRPLNGVFLTVSV
ADLLSQGPEQRTQLAASIRARLLELDAKLTTRLPVYVLVTKSDLLYGFTDYFDDLGKEQR
AQVFGFTLAAGENVQTEEKGLSTAFNREFALLHNRVNDGLIARMQRETDGTRRAAIFGFP
AQFGSIGSMLSDLLDQVFTGSRFAQPPWVRGVYFTSGTQEGSPIDRVMGSLSRSFGLERA
MLAPQKSSGRSYFLTALLREVVFPEQRLAGANVKLERRRHALRMAGVAAMTLVTLALLAG
WGYSTLQNVNYLKSVEARVEPARQNLAALPSRVQNLVEVAPVLQSLRDIWKTPDNRQGDE
PLSMTLGLYQGDKLDAAAMLTHQRALNDAFLPQIAKRIEDQLRTAQKDNLEYTYEALKSY
LMLYQPEHFDAEALKAWITLDWARSLDRGIPEDQRQALEDQLDVLIAQGPPRSPLKMDEN
LVRSVRAVLASYPLEQRVFSRLKRQRATKDIPGFSIATAAGPSAPLVFERISGKPLTEGV
PGMFTYDGYHKRFQNEVTVLTGLLAQEDPWVLGQDRSAADRMRDVAALGALTDRVRRLYL
AEYVKVWETLLADVRLIRASGLEKNIEAARILSGVGSPLANFLRAVVKETTLIPADQPKD
VVSKATATVANTRKGLEDLFGGDPNKAVASGKRIESIVDDRFEPLRRLVTPVAPNQPAPI
DDALKLFNEVYVYLNAVDTAVKGRTSPPPGDVAGKLKSDAGRLPEPVRTMVENLSQSGAA
QAQVAERGNLSQDLRPVTEFCNRAIAGRYPFVGSSKRDVLPEDFGQMFGAGGLMDDFFQK
RLAALVDTSTKPWRYKPVAERGAVTTQALAQFERAARIKDIFFRGGGRGPSMRLDFKPVE
MDAGITQFILDVDGQLVKYAHGPVVPMAVQWPGPKGSNQVRIQVSPPSTTGSSGSAVDGP
WALFRALDDGQLEAGDAPEKFFITFQVGPRKTRFEVTTNSVQHPIRLKELREFSCPEGL