Protein Info for ABID97_RS04960 in Variovorax sp. OAS795

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 663 transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 482 to 500 (19 residues), see Phobius details PF00512: HisKA" amino acids 298 to 360 (63 residues), 43.6 bits, see alignment E=3.8e-15 PF02518: HATPase_c" amino acids 406 to 519 (114 residues), 94.2 bits, see alignment E=1.1e-30 PF00072: Response_reg" amino acids 543 to 653 (111 residues), 53.4 bits, see alignment E=4.2e-18

Best Hits

KEGG orthology group: None (inferred from 90% identity to vap:Vapar_0508)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (663 amino acids)

>ABID97_RS04960 ATP-binding protein (Variovorax sp. OAS795)
MSEQLPPEGTRADIAPPPPHSAPKLVVRGNLQRDLFRLGVVPCAAVALALTGWFTHSRLQ
TLEAAFDAEGQAVARQVAAMSDLSLYAGDLPALQNVANAALRGGQVMRVEISNSAGIFVT
AGPKASSLAQLRMFTSPVTLREASRANAFAPAGSTAGGETPIGLVQTFRDTTAYARERSR
SLFAGIGIALVALLAAWASVRHMARTVARPLRRVSRTVAALEAGHFEARCDVVEGDAHSA
PPASAENDSHELAVLARDIDRLAERLQSNRRISEERVREATAVALQRMAEAEQAALSRAR
FLAAASHDLRQPLHAMGLFIDGLLPGASPAQRPAVLRLQESTEFMGVLLDDLLEISRLDA
QVLTPAIGKVPLAALFDQLDAQHAPTASETRVRLRWSDRGLAVRSDAALLQRIVGNLVAN
ALRHAPAGGTVLVAARRGRKDGDKVRIEVRDNGVGIAPIHQGRIFEEFYQVTNTERDRRR
GFGLGLAICARIAALLGTRITVRSALQAGSTFALTLPAARADEAATPEPAPVALTPLAGL
HCMVIDDDPAILDGSRALLEQWGCQVECVSTGAEAIARLGTGDLHFDAVLCDLQLAGDDD
GMDVITAAKRLQPDALAVLVSGATGPEVLQRLRHGGVMLLTKPVAPAKLRALLTTRRHAP
APA