Protein Info for ABID97_RS04760 in Variovorax sp. OAS795

Annotation: SPOR domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details PF05036: SPOR" amino acids 171 to 242 (72 residues), 65.1 bits, see alignment E=2.9e-22

Best Hits

KEGG orthology group: None (inferred from 92% identity to vap:Vapar_0462)

Predicted SEED Role

"Cell division protein FtsN" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (245 amino acids)

>ABID97_RS04760 SPOR domain-containing protein (Variovorax sp. OAS795)
MKKTTRQRGNIVIGLIIGLVLGLGVALGIAVYVTKVPIPFVTKTQRGGAEQDEAEARKNR
DWDPNAPLAGKAGAPKPAATGPVAPAGGDNTAVAPGAAPPAPPVPVVVAPAKPTRPAPVP
AEAKPLPPSNDPLGDLARARAGGNSGSTTTAAAAPGSNSNAAAPGADPFMYFVQAGAFRT
TEDAEAQRAKLSLMGVEARVTEREQAGRTVYRVRAGPFNKKDDADRLKERLDSGGLESAL
VRVQR