Protein Info for ABID97_RS04560 in Variovorax sp. OAS795

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 PF01266: DAO" amino acids 51 to 127 (77 residues), 31.8 bits, see alignment E=5.2e-11 PF07992: Pyr_redox_2" amino acids 51 to 267 (217 residues), 46 bits, see alignment E=2.1e-15 PF00890: FAD_binding_2" amino acids 51 to 87 (37 residues), 25.8 bits, see alignment 2.7e-09 PF01494: FAD_binding_3" amino acids 51 to 99 (49 residues), 28.4 bits, see alignment 4.6e-10 PF13454: NAD_binding_9" amino acids 53 to 196 (144 residues), 46.9 bits, see alignment E=1.3e-15 PF13450: NAD_binding_8" amino acids 54 to 82 (29 residues), 25.6 bits, see alignment (E = 5.4e-09) PF13738: Pyr_redox_3" amino acids 54 to 266 (213 residues), 43.2 bits, see alignment E=1.4e-14 PF13434: Lys_Orn_oxgnase" amino acids 134 to 267 (134 residues), 47.5 bits, see alignment E=6.7e-16

Best Hits

KEGG orthology group: None (inferred from 88% identity to vap:Vapar_0417)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (492 amino acids)

>ABID97_RS04560 NAD(P)/FAD-dependent oxidoreductase (Variovorax sp. OAS795)
MTTDSASSALSSSPEGLAALERRLARDLECLGWPARAWMPVRTHAGEPVLDVAIIGGGQA
GLAAAAALAQQGIRAVVFDRAPAGSEGPWATTARMETLRSPKELTGPALGLPALTFRAWF
EAQFGADAWARLDKIPRLQWMDYLAWYRRVMNVDVRNDTAVTAMLPLPDAALVRLGLRTP
AGAQQVLARRVVLATGRDGLGGPAVPAFVDALPRAQWAHSSDAMDYTRLAGLRVGVIGAG
SSAMDSAATALECGAHSVELLIRRPDLPRVNKGKGAGVPGLTQGHYDLPDALKWRIRHYI
NVANVPPPHGSTLRVSRFANAFFNFGCPVLSIEPEGTSSMRVATPRGEFVFDFLIVSTGF
KVDWNSRPEFDAIAAHVRTWKDRFAPAPGDEDQELADSPDLGPVFEFQQRAPGECPGLER
IHCFCYPAALSHGTVSGDIPAISEGARRLASGMASLFYREDFEHHFANLEAYSEPELFGD
EWTPAPPPSERS