Protein Info for ABID97_RS04450 in Variovorax sp. OAS795

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 9 to 29 (21 residues), see Phobius details amino acids 97 to 123 (27 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 196 to 217 (22 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 306 to 328 (23 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 101 (101 residues), 35.9 bits, see alignment E=7.3e-13 PF00528: BPD_transp_1" amino acids 114 to 334 (221 residues), 156.4 bits, see alignment E=7e-50

Best Hits

Swiss-Prot: 62% identical to DPPB_ECOLI: Dipeptide transport system permease protein DppB (dppB) from Escherichia coli (strain K12)

KEGG orthology group: K12369, dipeptide transport system permease protein (inferred from 96% identity to vap:Vapar_0395)

MetaCyc: 62% identical to dipeptide ABC transporter membrane subunit DppB (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>ABID97_RS04450 ABC transporter permease subunit (Variovorax sp. OAS795)
MLRFLLTRVSLLVPTFIGMTLLAFFLIRMVPGDPIETMAGERGIDPARHAQLRTAYGFDK
PVIVQYGIYIGRVLHGDLGKSLITQESVANEFLALFPATVELGVCAILFALLLGLPAGII
AAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYFVEPRTG
FLLVDALRAGEVDAFWSALHHLVLPAIVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK
GLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDY
PVLQGGMLLLGGIVMLVNLLVDVTYGIINPRIRR