Protein Info for ABID97_RS04340 in Variovorax sp. OAS795

Annotation: excinuclease ABC subunit UvrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 TIGR00630: excinuclease ABC subunit A" amino acids 33 to 667 (635 residues), 830.7 bits, see alignment E=9e-254 PF17760: UvrA_inter" amino acids 160 to 265 (106 residues), 117.3 bits, see alignment E=1.1e-37 PF17755: UvrA_DNA-bind" amino acids 334 to 446 (113 residues), 120 bits, see alignment E=2.1e-38

Best Hits

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>ABID97_RS04340 excinuclease ABC subunit UvrA (Variovorax sp. OAS795)
MLGCPRTIDPLKSPATEDPERDAYLGAVLAQQRISIRGARTHNLKNVDLDIPRNKLVVIT
GLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMDKPDVDVIEGLSPAISIEQKAT
SHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHHLPLQAQTVSQMVDATLAIPDEPRLMI
LAPVAREKKGEFLELFAEMQAAGYVRFRVDGQTYEYNDLPKLKKTEKHDIDVVIDRLRAR
PDMQQRLAESFEAALRLAEGRAIALELGARPESSADGAAGAAAAADKEHLFNAKFACPIC
HYSLSELEPRLFSFNSPVGACPSCDGLGHREVFDPARVVAFPTLSLASGAIKGWDRRNSY
YFSMIESVAKHYKFDVDAPFESLPASVQQVLLHGSAAEEIKFNYTMESGNFAGKKLTKKH
PFEGIIPNMARRYRETDSVMVREDLARFRNLQPCPDCGGSRLRPEARNVFLVDESARPAD
GGEPPRMAIFELSHLTLRDSLAWFQTLKLRGAKADIADKVVREIGLRLKFLNDVGLNYLS
LDRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDIGN
SVIVVEHDEDMIHAADHVIDMGPGAGIHGGRVMAQGSYAQVAANPDSLTGQYLSGAKKIE
VPRHRTAWLPVVKKPAFNDGKKASRFPPSPAAERRAAREAAHLASQTDLQEIRVVGATGN
NLKNVSVAFPVGLLTCVTGVSGSGKSTLVNDTLYTAVARTLYRAHEEPAAHESVEGIEYF
DKVINVDQSPIGRTPRSNPATYTGLFTPIRELMAETNTARERGYGPGRFSFNVAGGRCEA
CQGDGVVKVEMHFLPDVYVPCEVCHGQRYNRETLEVQYKGRNIAQILEMTVETAHEFLKA
VPTIERKLRTLLDVGLSYIKLGQSATTLSGGEAQRVKLALELSKRDTGRTLYILDEPTTG
LHFADIELLLKVLHQLRDAGNTIVVIEHNLDVIKTADWLIDMGPEGGAGGGTVVGEGTPE
DIAANEASHTGRYLKRLL