Protein Info for ABID97_RS04315 in Variovorax sp. OAS795

Annotation: branched-chain amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 14 to 40 (27 residues), see Phobius details amino acids 62 to 84 (23 residues), see Phobius details amino acids 96 to 116 (21 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details amino acids 277 to 297 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 10 to 294 (285 residues), 120.9 bits, see alignment E=2.8e-39

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 99% identity to vpe:Varpa_0384)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (306 amino acids)

>ABID97_RS04315 branched-chain amino acid ABC transporter permease (Variovorax sp. OAS795)
MSGILVLEQLLNGLGYGLMLFLLAAGLTLVFGIMDVLNLAHGSLFMSGAYVAAEAHTRTG
SFTAAIVIAVAVTVVVALLLEVLLMRRLYTRDHLAQVLATFGVILVADDIVTMAWGPSPV
MAPTPAALSGPVNLMDGLPYPAYRLVILVGGLLVALALYLLVNHTRIGMRVRAGASDRPM
AELMGVRVGRIFNGVFLLGAALAALAGALMGPIVAVQVGMGEAILIPALVVLVIGGIGSV
RGAFVAALLVGVVDTIGRAFVPMLLRATLPPANAADLGPLFAEVAMYALMVIVLIFRPSG
LFSARA