Protein Info for ABID97_RS04055 in Variovorax sp. OAS795
Annotation: ABC transporter ATP-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 47% identical to FBPC1_RHIME: Fe(3+) ions import ATP-binding protein FbpC 1 (fbpC1) from Rhizobium meliloti (strain 1021)
KEGG orthology group: K02052, putative spermidine/putrescine transport system ATP-binding protein (inferred from 91% identity to vpe:Varpa_0321)Predicted SEED Role
"ABC-type spermidine/putrescine transport systems, ATPase components"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (362 amino acids)
>ABID97_RS04055 ABC transporter ATP-binding protein (Variovorax sp. OAS795) MSFLRLTDVTKFYGATRAVSAMNLTVEKGEFVSLLGPSGCGKTTTLQMIAGFEAVSGGRI ELAGKDITHAKANTRGLGIVFQTYALFPHMTVADNVSFGLEMRKMPKAERKERVKQALAL VHLEAHAARYPRELSGGQRQRVALARALVIEPPVLLLDEPLSNLDAKLREEMQFELRQIQ RKVGTTTVMVTHDQSEAMSISDRVVVMEGGCATQIDHPHRVYEHPSTRFISTFVGKANLL DARVTVCGARSCHVEVGPLTVEVDDTGHASGAAVLMSVRPEKLQLVEAGRGRLDGTVQER FFLGSQWLYRLRTPAGELTVLSPNDGRDALDEGSATGIDWPAHCTRLLPAESAESAEAAV AA