Protein Info for ABID97_RS04045 in Variovorax sp. OAS795

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 7 to 31 (25 residues), see Phobius details amino acids 66 to 88 (23 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 130 to 156 (27 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 231 to 254 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 81 to 251 (171 residues), 49.5 bits, see alignment E=2.2e-17

Best Hits

KEGG orthology group: K02053, putative spermidine/putrescine transport system permease protein (inferred from 98% identity to vap:Vapar_0306)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>ABID97_RS04045 ABC transporter permease (Variovorax sp. OAS795)
MSKNGPLALAFNALVITFMLAPLVVVCIVAFTPENTLTIPTTHFSLRWFEAVFAHPDFMQ
SFWNSLWLALASATIATLIAVPAGMAITRYAFPGRDFLNGLFLSPLIIPHLVLGVALLRL
FALVGGTGSFGWLVMAHALIVTPYTLRLVVAALVGFDRSAEQAALSLGASQATMFRRITL
PMILPGVTGGWLLAFINSFDEVTMSIFVTSPSTVTLPVRMYMYATESIDPLMAAVSALMV
AVTAIAMVVLDRVYGLDRVLVGRR