Protein Info for ABID97_RS03535 in Variovorax sp. OAS795

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF00005: ABC_tran" amino acids 20 to 173 (154 residues), 117.1 bits, see alignment E=9.6e-38 PF12399: BCA_ABC_TP_C" amino acids 222 to 246 (25 residues), 32.7 bits, see alignment (E = 4.6e-12)

Best Hits

Swiss-Prot: 34% identical to PHNC_ALCFA: Phosphonates import ATP-binding protein PhnC (phnC) from Alcaligenes faecalis

KEGG orthology group: K01995, branched-chain amino acid transport system ATP-binding protein (inferred from 98% identity to vap:Vapar_0185)

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>ABID97_RS03535 ABC transporter ATP-binding protein (Variovorax sp. OAS795)
MTLLKVDNLGKSFGGVKAVDGISFELKAGELLALIGPNGAGKSTTFNMVNGQLKADQGSI
VFDGHELVGQKPRDIWRKGVGRTFQIAETFASLTVVENVQMAMLSHDGKLFSMWRRAADH
KRDEALALLDQVGMKAQADRPCSELAYGDVKRVELAIAMANAPKLLLMDEPTAGMAPKER
NSLMALTKELVVQRGLAVLFTEHSMDVVFAYADRMIVLARGRLIAQGKPLEIRDHPKVQE
VYFGSGKTFEKIAEKAAAVNAAVGATA