Protein Info for ABID97_RS03425 in Variovorax sp. OAS795

Annotation: urocanate hydratase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 TIGR01228: urocanate hydratase" amino acids 21 to 570 (550 residues), 946 bits, see alignment E=3.2e-289 PF17391: Urocanase_N" amino acids 22 to 148 (127 residues), 203.5 bits, see alignment E=1.3e-64 PF01175: Urocanase" amino acids 151 to 365 (215 residues), 274.5 bits, see alignment E=8.7e-86 PF17392: Urocanase_C" amino acids 368 to 562 (195 residues), 310.6 bits, see alignment E=5.5e-97

Best Hits

Swiss-Prot: 77% identical to HUTU_TRIRP: Urocanate hydratase from Trifolium repens

KEGG orthology group: K01712, urocanate hydratase [EC: 4.2.1.49] (inferred from 97% identity to vap:Vapar_0159)

MetaCyc: 76% identical to urocanase subunit (Pseudomonas putida)
Urocanate hydratase. [EC: 4.2.1.49]

Predicted SEED Role

"Urocanate hydratase (EC 4.2.1.49)" in subsystem Histidine Degradation (EC 4.2.1.49)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 4.2.1.49

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>ABID97_RS03425 urocanate hydratase (Variovorax sp. OAS795)
MNAPEKLPLQDTDPRHDPTRVIRAPRGSTLSCKSWLTEAPFRMLQNNLDAEVAERPQDLV
VYGGIGRAARNWACYDQILASLKELNDDETLLIQSGKPVGVFKTHENAPRVLLANSNLVP
KWANWEHFNELDRLGLFMYGQMTAGSWIYIGSQGIVQGTFETFVEAGRQHYNNSLAGKWI
LTAGLGGMGGAQPLAATLAGAVSLNIECQQASIDFRLRTRYVDKQARDIDHALELIKQHC
DAKEAVSIALLGNAADILPELVKRAKAGGIRPDLVTDQTSAHDLINGYLPSGWTVPQWQA
AMKDASQHAALTAAAARSCAVHVQAMLDFQAMGIPTVDYGNNIRQVAFDEGVKNAFDFPG
FVPAYIRPLFCEGKGPFRWVALSGDPEDIYKTDAKIKELFPENTHTHRWLDMARERIAFQ
GLPARICWLGLGERHIAGLAFNEMVKNGELKAPIVIGRDHLDTGSVASPNRETEAMKDGT
DAVSDWPLLNALLNTAGGATWVSLHHGGGVGMGYSQHSGVVIVCDGTDAAAKRIERVLWN
DPATGVMRHADAGYDIAVATAKKQGLNLPMVR