Protein Info for ABID97_RS03330 in Variovorax sp. OAS795

Annotation: AMP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 970 PF00501: AMP-binding" amino acids 11 to 361 (351 residues), 264.8 bits, see alignment E=2.9e-82 PF13193: AMP-binding_C" amino acids 412 to 486 (75 residues), 50.4 bits, see alignment 8.9e-17 PF13380: CoA_binding_2" amino acids 514 to 639 (126 residues), 85.3 bits, see alignment E=1.1e-27 PF02629: CoA_binding" amino acids 514 to 604 (91 residues), 27.2 bits, see alignment E=1.3e-09 PF13607: Succ_CoA_lig" amino acids 661 to 795 (135 residues), 109.8 bits, see alignment E=2.4e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (970 amino acids)

>ABID97_RS03330 AMP-binding protein (Variovorax sp. OAS795)
MRIDNIVDEVAAGRRGAHRALLLEDGRVLSYAQLAARIETAAAALAEAGLAPGQRMVLVG
ENSEDMVVLLLGAIRAGGWAVPLNARMSSGEIDAICAHCEPRLVYFAAGASGEALAHADR
RGAASGLACAPGGRLQRCEGPGTAAEASGADVALMIYTSGSTGLPKGVMLTHGNLDFVTR
ASMAQQVLLPDDVIFHALPISHSFGLVSALLCGLRAGATLRLVERFSAGLLAEAITSGQV
TVFQGVPAMYARLHEWAQQHGRALTPNRLRMAYIGGSLVDATRKAQTEALLGLPLHHGYG
LTESAPAVTRTFGHAPPADVTAGWPIPGVEVVLADADGGPVAAGERGEVLVRGPNVMKGY
FRDPAQTRAAVDAEGWLHTGDIGVFGPAGDLSIVGRSKEMIIRGGFNVYPAEVEKAIAAY
PEVAQCAVVGRCVPGDEEIVAFVEPLQGRCIDAARLCAFLRERLAPYKVPAEVHVMAQLP
ASPTGKLLKSQLKALAGAAPAPARPSLERLLAPRSVAVVGASDNPHKVGGRPIRYLLEQG
FAGRIYPVHPRAGKVQGLQAYAALGELPEVPDAVVLCIGADQAGHQLAECARLGIGHALL
FASGYAEVGAEGRVRQEALAAIARAGGVRLVGPNSIGVASFDSGAVLSFASIYSDHAPLD
GPVAIVSQSGAFGVSAYALLREAGWGVRCVAATGNEADVDTADLVDALARRPGVRLVLLY
VEHVPDPARMAVALGTARERGVAVLAVRSGRSAHGRRSADLHTGSAGAAGDTLDALFESH
GCRTVGGLAELVGAVPLYLGPAPGAGGPGGLPRLALVSNSGASCVLAADEAQARGLPLAP
LSADAEQRLAELLPNFSLNRNPVDLTAMLLAEPALLGAVVQVVLHDEAVDAATLGLLAVG
GPSYDLPRFVRECRAVVDGVGKPLAVYSPHPHVREAFAKDGFAVFPGEAEAMQALQAFAL
HRSPAEVAPG