Protein Info for ABID97_RS03060 in Variovorax sp. OAS795

Annotation: LysR substrate-binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF00126: HTH_1" amino acids 12 to 69 (58 residues), 70.3 bits, see alignment E=1.1e-23 PF03466: LysR_substrate" amino acids 95 to 300 (206 residues), 133.9 bits, see alignment E=5.3e-43

Best Hits

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_0080)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>ABID97_RS03060 LysR substrate-binding domain-containing protein (Variovorax sp. OAS795)
MQRQFGDILLGSIELFCLAAESGGFTSAALAAGVTPAAVSRSISRLEKRLGLRLFVRTTR
SVRLTDAGRTYFAQCRQALAQLAEAEREVMGQQMQPSGTLRISVPTTYGHHRILPLLPAF
RERYPDIRLHVHLSNRNIDFVEEGYDMAVRVRAQPDSTLIARHLEDAQLVVVATLKYLKK
AGTPRTLDDLAAHECIQFELPSSGRRISWLFRENGKDREVLADSAYSCSDDVLGGVTLAK
SDAGLFQAYRFVVEKELADGSLVEVLKPFAGRSRPYTLLYPDGRHVPLRMRVFIDFLMAQ
RAA