Protein Info for ABID97_RS02260 in Variovorax sp. OAS795

Annotation: inner membrane protein YiaA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 62 (21 residues), see Phobius details amino acids 74 to 98 (25 residues), see Phobius details amino acids 105 to 122 (18 residues), see Phobius details PF05360: YiaAB" amino acids 12 to 64 (53 residues), 72.1 bits, see alignment E=1.8e-24 amino acids 75 to 127 (53 residues), 77.9 bits, see alignment E=2.7e-26

Best Hits

Swiss-Prot: 61% identical to YIAA_ECOLI: Inner membrane protein YiaA (yiaA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 79% identity to vpe:Varpa_5918)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>ABID97_RS02260 inner membrane protein YiaA (Variovorax sp. OAS795)
MDHKFQKPTGAFVAASWAALFAGGGVYLVGLWNATMQLNEKGYYFTLLMYGLFAAVSLQK
TVRDRLEGTPVTGIYFGFCWISLLLAIGLLAVGLFNATLANSEKGFYAMAFLLSLFGAVA
VQKNVRDVASQDKGTGSGADIPELE