Protein Info for ABID97_RS02145 in Variovorax sp. OAS795

Annotation: DegT/DnrJ/EryC1/StrS family aminotransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 387 PF01041: DegT_DnrJ_EryC1" amino acids 14 to 382 (369 residues), 449.7 bits, see alignment E=2.2e-138 PF00155: Aminotran_1_2" amino acids 35 to 163 (129 residues), 30.4 bits, see alignment E=5.9e-11 PF01212: Beta_elim_lyase" amino acids 36 to 217 (182 residues), 34.1 bits, see alignment E=4.7e-12 PF00266: Aminotran_5" amino acids 38 to 207 (170 residues), 39.6 bits, see alignment E=8.5e-14

Best Hits

Swiss-Prot: 47% identical to SPSC_BACSU: Spore coat polysaccharide biosynthesis protein SpsC (spsC) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 73% identity to adn:Alide_3158)

Predicted SEED Role

"Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (387 amino acids)

>ABID97_RS02145 DegT/DnrJ/EryC1/StrS family aminotransferase (Variovorax sp. OAS795)
MTSQPPFLPFALPDTGEEEIALVAEAIRSGWVTTGPKAKRFEQEVAAFLGDERLHCMAVN
SATAGLHLALEALGVGPGDEVITTTHTFTATAEVARYLGADVVLVDIDPRTLCIDVNQVE
AAITARTKAVIPVHYAGLAADMPALMAIARKHGLKVVEDAAHALPTTSAGRLVGTLDSDF
TVFSFYANKTISTGEGGMVVTRDAALAERVKIMRLHGINRDAFDRFRSTTPAWYYEVVAP
GFKYNLTDIAAAMGLAQLAKLPRFLERRQYLAARYREQLSSLPLILAPEPPPGETHAWHL
YVIRLDATARLGRDALIQALSDRGIGTSVHYIPLHRQPYWRDRYSLNAEMFPHSEAAYQR
MLSIPLFTAMTDADQDRVIAALHELLG