Protein Info for ABID97_RS02110 in Variovorax sp. OAS795

Annotation: type IV pilus modification protein PilV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 13 to 41 (29 residues), see Phobius details PF07963: N_methyl" amino acids 12 to 35 (24 residues), 27.3 bits, see alignment (E = 1e-10) TIGR02532: prepilin-type N-terminal cleavage/methylation domain" amino acids 14 to 34 (21 residues), 21.8 bits, see alignment (E = 1.2e-08) TIGR02523: type IV pilus modification protein PilV" amino acids 14 to 166 (153 residues), 98.6 bits, see alignment E=4.3e-32

Best Hits

KEGG orthology group: K02671, type IV pilus assembly protein PilV (inferred from 53% identity to aav:Aave_3554)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>ABID97_RS02110 type IV pilus modification protein PilV (Variovorax sp. OAS795)
MKTLLVSGRRAANAGFSLIEVLIAIVVLSFGLLGMVGLQAASLQANRDARLQSAATVLAR
EFAEMMRGNKAVALLATGNPYLGDFSSPLVPGTANYCMAVGATCATAEATAQAELTEWLA
RVDAELPGAHVKICHDSAPYGSSGLPTWTCTSSATTDVVVVKIGWTRTSTRRGDTTLDQA
AAPSVILPVTAGSTL