Protein Info for ABID97_RS02090 in Variovorax sp. OAS795

Annotation: phage holin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 117 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 46 (19 residues), see Phobius details amino acids 53 to 77 (25 residues), see Phobius details amino acids 89 to 114 (26 residues), see Phobius details PF04020: Phage_holin_4_2" amino acids 1 to 104 (104 residues), 122 bits, see alignment E=8e-40

Best Hits

Swiss-Prot: 35% identical to YVLD_BACSU: Uncharacterized membrane protein YvlD (yvlD) from Bacillus subtilis (strain 168)

KEGG orthology group: K08972, putative membrane protein (inferred from 94% identity to vpe:Varpa_5896)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (117 amino acids)

>ABID97_RS02090 phage holin family protein (Variovorax sp. OAS795)
MRIILKWLLSAVALLAVAYLYPGVQVNSFGSALLAAAVIGLLNMIVRPVLVVLTLPVTIV
TLGLFLFVINALLFWAASGLLSGFQVSGFVAALIGSLIYSLLGLIIEAALGGLLSKR