Protein Info for ABID97_RS01950 in Variovorax sp. OAS795

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 15 to 32 (18 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 367 to 390 (24 residues), see Phobius details amino acids 402 to 421 (20 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 387 (365 residues), 174.5 bits, see alignment E=1.5e-55

Best Hits

Swiss-Prot: 51% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 95% identity to vap:Vapar_5147)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>ABID97_RS01950 MFS transporter (Variovorax sp. OAS795)
MQADGSLEKRAYAKVFWRLVPFLMLCYVVAYLDRVNVGFAKLQMGQDLGFSETVFGLGAG
IFFLGYFLFEVPSNLLLNRVGARIWIARIMITWGVLSACFVFVETSTSFYILRFLLGVAE
AGFYPGVILYLTQWYPAHRRARIIAVFMSAIPVAGIFGNPLSGWIMDSFHGVSSMHGWQW
MFLIEAAPAILVGIMVLLYLDNGIQQARWLDPDEKRLLQREVERDQAHGAKGPHSVAAVF
RDARVWWMALIYFAFVMGQYALTFWLPTLVKATGVKGNLHIGLLSAIPFVCAIVAMNLFG
RSADRRQERRWHLIVPALMGAIGFTVAASYTQNTVVSLAFLSLAAAGVLTCAPLFWSLPT
AFLSGTAAAAGIAAINSVGNLAGFASPYLIGYLKDLTGSTQIGMYVLAGALVLGAIGVWL
TPKQLVNR