Protein Info for ABID97_RS01840 in Variovorax sp. OAS795

Annotation: DUF1631 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 783 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF07793: DUF1631" amino acids 6 to 774 (769 residues), 470 bits, see alignment E=8.3e-145

Best Hits

KEGG orthology group: None (inferred from 86% identity to vap:Vapar_5117)

Predicted SEED Role

"Thymidine phosphorylase (EC 2.4.2.4)" in subsystem Deoxyribose and Deoxynucleoside Catabolism (EC 2.4.2.4)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.2.4

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (783 amino acids)

>ABID97_RS01840 DUF1631 family protein (Variovorax sp. OAS795)
MSIARSASSLQLARETRERFVLATGGVIAPLAQAIRDRLTQQASEMSNARAMQESRDDFV
AFQGQASHWVALAQTGWRKSIDTVSTTAGMSSNAKLRLELIDDDAMESSILSSRLAQVIH
DKASFELSDLRLRIQHLEGSSELDAHDVLRPETLAKLLVDQWLAAGLSRTLWARVQDTVQ
QLLVGVIVKAYEDANAFLISRDVMPEIDLKSFVRRTGASGSGPSTVPASVNTTGAVQRQA
FEAPSQPRASGATGPAATTGGSPLLVARQRAQTALLSLKRFVAARIGADLSNVSSSPTTT
GLDGRVQDAGAGGATSRAASKTFANVIAEAEAAYRMAATQYMEGSEEQATIIQQASVDLR
RRSAELKKRAPTTADKATVEIVALMFQAILAEERIPFSARVWFARLQMPVLRVAIAEPEF
FGTLQHPARMLIDRMGSCVMGFDAAAISGSALEGEIRRVVQVIEQYPETGQRVFKLVFDE
FVAFLNRYLTQSDATQRVMSVAQQVEQKETMAIQYTIELRKMLNDMPVRDEIREFLFKVW
AEVLAIAALRYGAQGEQTVMLKRVASELVWAASAKPNRADRTRVIQDLPQLLQRLRLGMN
LLGVIDEPQEAHIKTIGATLSDAFLSKTEAIPAAKIEAMAAHLAHLEDFVSDDGSASSLP
LDANSIELLLGVDAASIEVVADIAGGAPAEDMLAWAHELEVGNWFMLDHNERVSQVQFVW
RSDRKQLHLFATADGRSFLIQVGRLANYLQAGLLVPAEEETLTVRATREALAKLDANPER
LLN