Protein Info for ABID97_RS00985 in Variovorax sp. OAS795

Annotation: glycosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 379 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF06925: MGDG_synth" amino acids 15 to 182 (168 residues), 77.5 bits, see alignment E=2.6e-25 PF02350: Epimerase_2" amino acids 155 to 372 (218 residues), 32.5 bits, see alignment E=8.6e-12 PF04101: Glyco_tran_28_C" amino acids 217 to 367 (151 residues), 47.9 bits, see alignment E=3.1e-16 PF00534: Glycos_transf_1" amino acids 243 to 358 (116 residues), 28.3 bits, see alignment E=2.5e-10

Best Hits

KEGG orthology group: None (inferred from 94% identity to vap:Vapar_4986)

Predicted SEED Role

"Monogalactosyldiacylglycerol synthase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (379 amino acids)

>ABID97_RS00985 glycosyltransferase (Variovorax sp. OAS795)
MKKILILSVSAGNGHVRAAQALEAAAQSAPPHTAVHIDAMAHVAGGFRKVYTDWYIQLVN
RAPELWSYLHQRADTTPHHAPSQRLRRGIERLSTGALVREIRREKPDAVVCTHFLPAELL
MRERNGGRIDYPVWLQITDYDLHNMWLVPGMAGYLAATEEVAFRLRARGIPPERIHVTGI
PVMPAFSEPDAPALAHDACARALGLDPSRPVLLMASGGAGVGDLASMVERVLLLGGDSGL
QVIAVAGRNAETHLKLQALAARHPGRVVAIGFTSEMHKLMAAADLVVTKPGGLTVSECLA
LGKPMLLISPIPGQEEHNAGFLMEEGAAWLAYDTIGLDYKVARLMADPAKLADMARRSRA
LGKPRAAAAVLRHVLGEGE