Protein Info for ABID97_RS00210 in Variovorax sp. OAS795

Annotation: stage II sporulation protein M

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 transmembrane" amino acids 101 to 122 (22 residues), see Phobius details amino acids 169 to 196 (28 residues), see Phobius details amino acids 200 to 222 (23 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details PF01944: SpoIIM" amino acids 108 to 286 (179 residues), 125.1 bits, see alignment E=1.4e-40

Best Hits

KEGG orthology group: None (inferred from 50% identity to pba:PSEBR_a4470)

Predicted SEED Role

"FIG01248689: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>ABID97_RS00210 stage II sporulation protein M (Variovorax sp. OAS795)
MTPLDFEAAYAPIWAELEQVIGVAESKRKFDGARLATLYRRVCEHLALAQARAYPIHLTQ
RLEALTQNAHRLVYRRHDYGMARFARLALVDFPEAVRAHRAFLWAAALMFLLPLVAAGWA
AYRDPGFILHLLDAGDVQQFDAMYGDGAEALGRKREADDDWEMFGYYVMHNIGIGFRCFA
AGIFAGVGSAAVLVFNGIQIGAVGGYLVAAGHAGNFLSFVVTHSAFELTAIVLAGAAGLR
LGYAWLAPGRHTRLEALRLAARHAVVIVYGVVGLLLVAAAVEAFWSSARWVPPAVKYGVG
GACWLMVLAYLGWQGRPRAGTSAMKERHAG