Protein Info for ABID97_RS00110 in Variovorax sp. OAS795

Annotation: SGNH/GDSL hydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF00657: Lipase_GDSL" amino acids 230 to 433 (204 residues), 99 bits, see alignment E=4.4e-32 PF13472: Lipase_GDSL_2" amino acids 232 to 428 (197 residues), 105.5 bits, see alignment E=4.8e-34

Best Hits

KEGG orthology group: None (inferred from 84% identity to vap:Vapar_4791)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (440 amino acids)

>ABID97_RS00110 SGNH/GDSL hydrolase family protein (Variovorax sp. OAS795)
MNLGSHWVSVFRRVVLRHGVAAVGLLLLAAAVAVQAVQPTRARQPAEARWVAGWAAAPVD
FRELSANPLLKAAAPRPGGDAFRGQTVRQQFEPALGGERVRIRFSNRFGKTPLRVAAASV
AHATGGGAISPSTLRVLRFGGRASAVVAPGAEVWSDGADLKVEPGQAVAVSAFFDRPVPF
ATVHLQAPDATWLAGGNAVAAGTLPGAEPLALNHVVTGLDVMTSQPTRAVVAFGDSITAG
GGEAGDGSYPDLLATRLRNSPAAKPVSVLNAGIGGNRLLVDGIGPNGLSRFARDALGQSG
VTHVIVLLGTNDIGRNVFVGLPGRPTPEHEVATAQRITEGLQQLVKQARAKGVKVLLGTV
PPFKDTPYWNEASETMRGEVNRWIRSRQDVDGVIDFDAVLRNPADPAALNPLYDNGDHLH
PNKAGHAAMASAVDLRELQE