Protein Info for ABI39_RS20880 in Phocaeicola dorei CL03T12C01

Annotation: family 10 glycosylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF06452: CBM9_1" amino acids 47 to 198 (152 residues), 42.7 bits, see alignment E=6.1e-15 PF02638: GHL10" amino acids 404 to 636 (233 residues), 33.9 bits, see alignment E=1.9e-12

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_4051)

Predicted SEED Role

"FIG00410426: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (679 amino acids)

>ABI39_RS20880 family 10 glycosylhydrolase (Phocaeicola dorei CL03T12C01)
MKKLIYTLLLLLVTFPAMAQSLFEQYERFLTEPRTYVCYRPDGKLKIDGKLNESSWKKAA
PTAPFVDISGEGFPTPKYETTAKMLWDDEYLYVGAVLQEEDIKARLTQRDTIIYYDNDFE
VFIDPDSDGHNYFEIETNARGVIFDLMLDKPYRSGGNFMVQWDCPGLKTAIHCEGTLNKS
KDKDKYWSVEMAIPHQALTMNFNNPLKAGNTWRINFSRVQWLKEKGPEENWVWTPTGRID
MHMPDRWGYLYFVDKKVGTSQDELVYPYNQAIYKLLWAMFYAQQDNYSKQHNYLRATEQF
FLTDKELKALPADARIAVEATQNTYQIAITNPAEGVRYVINNEGRFRTEKIPAREVKNWL
WMRLNNRSDAEWKKWFALLKECGISGVMFEGYNENIYRLCKEAGLEAHYWKWTMNRRELL
DKHPDWYAVNRKGESCHDKPAYVDYYRFLCPNHQGVAEYLAEDYVKEAHKPYVDGVHLDY
VRMPDVILPVSLWKNYGIEQKEELPEYDYCYCDVCRELFKAKTGQDPLELKYPMENQSWI
NFRLDAITRVVDAITKAVKADHKAISAAVFPGPSMARKMVRQDWGEWTLDAYYPMIYNKF
YYEGPEWIGRSVKESVETVNGRAKIYAGLMFGDIKDNFEEALDEAYNNGASGVSFFDGPD
EEYLHKFKAYLDKRGFVVK