Protein Info for ABI39_RS20810 in Phocaeicola dorei CL03T12C01

Annotation: flippase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 480 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 83 to 106 (24 residues), see Phobius details amino acids 112 to 133 (22 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details amino acids 167 to 187 (21 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 289 to 314 (26 residues), see Phobius details amino acids 325 to 344 (20 residues), see Phobius details amino acids 355 to 377 (23 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 414 to 435 (22 residues), see Phobius details amino acids 442 to 461 (20 residues), see Phobius details PF01943: Polysacc_synt" amino acids 4 to 273 (270 residues), 118 bits, see alignment E=1.1e-37 PF13440: Polysacc_synt_3" amino acids 28 to 324 (297 residues), 59.7 bits, see alignment E=5.9e-20 PF03023: MurJ" amino acids 101 to 434 (334 residues), 48.6 bits, see alignment E=9.9e-17 PF14667: Polysacc_synt_C" amino acids 327 to 458 (132 residues), 78.6 bits, see alignment E=1.1e-25

Best Hits

KEGG orthology group: None (inferred from 54% identity to bsa:Bacsa_1210)

Predicted SEED Role

"Membrane protein involved in the export of O-antigen, teichoic acid lipoteichoic acids"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (480 amino acids)

>ABI39_RS20810 flippase (Phocaeicola dorei CL03T12C01)
MSVKQNYFYSLLNTISGLLFPIVTFPYVARILMADGIGQVNFYLSIINYISMFAGLGIPT
YAIREIARVKSNVKEMNQVAVEILLLHTFLTLLGYIVVGVVALTVAQVQVNLPLFLILSM
NLFFIAIGCEWFYQGMEDFKYITIRGLIVKMLSVALLFVLVKDRSDLLYYGVYSVVGVVG
GNIFNAFRLRKYIKFHLLELKELHPMRHLIPALRIFLLNVVASIYLQLDTVMLGFLKGNE
AVGYYTGAIKLTKMLMGITSSLCVVLLPRLSNLVVENEREEFERLLRKALDYVITIAAPM
SMGLVIMAPTLVYLFCGEGYVPSISTMQITAPIILFISISYVLVQSIFSLGKENITIITG
IVGALTNVAINFMLIPHWAQDGAAIGTLLAEFSVMIAYLFIIRRFSIISIFTRHTALCLF
AVAIMGTCLWGVSLWKFSHTLNLFVMPLVGGAVYATVLGFAKEPLLLDVCRMVKQRIRIK