Protein Info for ABI39_RS19980 in Phocaeicola dorei CL03T12C01

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 28 to 50 (23 residues), see Phobius details amino acids 280 to 304 (25 residues), see Phobius details amino acids 326 to 356 (31 residues), see Phobius details amino acids 377 to 402 (26 residues), see Phobius details PF12704: MacB_PCD" amino acids 28 to 244 (217 residues), 64.5 bits, see alignment E=1.7e-21 PF02687: FtsX" amino acids 282 to 407 (126 residues), 39.8 bits, see alignment E=4.2e-14

Best Hits

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 98% identity to bvu:BVU_3864)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (414 amino acids)

>ABI39_RS19980 ABC transporter permease (Phocaeicola dorei CL03T12C01)
MDWKLFIARRIYRSNEGGKEVSKPAVRIAMLGIAIGLAVMIVSVAVVIGFKHEVRDKVVG
LGADIVITNFDSQQSYQTVPIVANDSLLHLLKTLEGVKHVQRYSTKPGMIMTSDSFQGMV
LKGVSHEYDWRFLKNHLQEGEIPVFSDTASTNKVLVSRTIADRLHLKLGDKIYTYYIEDN
VRARRLTVAGIYQTNFSAYDDLFLITDLYTVNRLNSWQKGQVSGIELEVNEYSRLESVKE
EIRARVDTQVDAYGGTYYTQSVEEVNPQIFAWLDLLDMNVWVILFLMTGVAGFTMISGLL
IIILERTNMIGVLKALGADNFAIRKIFLSFSVFLIGRGMVWGNIIGVALCFIQSQFHLFK
LDPATYYVDRVPIEFNIWIYLLLNVCTLLVSVLMLVGPSFLVTRIHPAKSIRFE