Protein Info for ABI39_RS19975 in Phocaeicola dorei CL03T12C01

Annotation: lysine exporter LysO family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 32 to 51 (20 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 122 to 139 (18 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 181 to 203 (23 residues), see Phobius details PF03956: Lys_export" amino acids 8 to 204 (197 residues), 200.8 bits, see alignment E=8.1e-64

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_3863)

Predicted SEED Role

"putative surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>ABI39_RS19975 lysine exporter LysO family protein (Phocaeicola dorei CL03T12C01)
MKSSLVTLAFFLFGCVTGVSYAVDFDVHQTSVYVLYVLMLLLGINLGSNRNLRQFVLSLN
FRTLLVPFATVSGTLLFSAIGGFLLSRWSIFDCMAVGSGFSYYSVSSILITQIKSPSIGV
QLATELGTIALLSNIFREMTALIGAPLFRKYFGYLAPISAAGIGSSDISLAAIARCSGPE
AVPVAIVHGILINISMPFFVSFFCKL