Protein Info for ABI39_RS19245 in Phocaeicola dorei CL03T12C01

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF02129: Peptidase_S15" amino acids 64 to 327 (264 residues), 46.1 bits, see alignment E=1.3e-15 PF00561: Abhydrolase_1" amino acids 102 to 336 (235 residues), 34.8 bits, see alignment E=3.5e-12 PF01738: DLH" amino acids 130 to 184 (55 residues), 26.8 bits, see alignment 9.3e-10

Best Hits

KEGG orthology group: K06889, (no description) (inferred from 96% identity to bfr:BF2084)

Predicted SEED Role

"Dienelactone hydrolase and related enzymes"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>ABI39_RS19245 alpha/beta hydrolase (Phocaeicola dorei CL03T12C01)
MKLQAIAILTFLTFANVMAQETTTTKYINSTGMEPLELTQEWDKTFLQSDKVEHTKITFH
NRYGITLAADLYKPKNTQGRLVAIAVSGPYGAVKEQVSGRYAQTLAERGFLTIAFDPSYY
GESGGTPRYLTSPEISTEDFSAAVDYLTSRADVNPERIGILGICGWGGFALNAAANDPRI
KATVTSTMYDMSRVNANGYFDAMSADDRYKLREQLNAQRTEDYRDDSYARDGGVLDPVTD
DTPQFVKEYHDYYKTERGYHRRSPNSNEGITKTSVLSFINMPLLTYISEIRSAVLMIHGE
KAHSRYFSEDAYKRLTGSNKELLIIPGANHVDLYDKIDVIPFDKIDGFFKNALK