Protein Info for ABI39_RS18830 in Phocaeicola dorei CL03T12C01

Annotation: C69 family dipeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 546 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03577: Peptidase_C69" amino acids 21 to 46 (26 residues), 27.2 bits, see alignment (E = 1e-10) amino acids 54 to 439 (386 residues), 348.5 bits, see alignment E=2.7e-108

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_3805)

Predicted SEED Role

"Probable dipeptidase (EC 3.4.-.-)" (EC 3.4.-.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.4.-.-

Use Curated BLAST to search for 3.4.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (546 amino acids)

>ABI39_RS18830 C69 family dipeptidase (Phocaeicola dorei CL03T12C01)
MKNKLILGAAFLLAAITESLACTNLIVGKGASVDGSVIVSYSADSYGMFGELYHYPAGMH
EKGTMRDIYDWDSGKYLGQIKEARQTYNVVGNMNEFQVTIGETTFGGREELVDSTGIMDY
GSLIYVALQRSRTAKEAIQVMTDLVKEYGYYSSGESFSIADPNEVWILEMIGKGPGVKGA
VWVAVRIPDDCIAAHANQSRIHQFNMNDKDNCLYSSDVISFAREKGYFDGMNKDFSFSAA
YNPLDFGGVRFCEARVWSFYNMFNKSVGDTYLPYIQGDSKEPMPLYIKPSRKLSVRDVQA
AMRDHYEGTPLDITNDPGAGPFKTPYRLSPLSFKVGDQEYFNERPISTQQTAFTFVAQMR
ASLPDAIGGVLWFGTDDANMTVFAPVYCCSDRIPDCYSGKEADCVTFSWDSAFWIYNWVA
DMIRPRYSLMIDDMRAVQNNLEDTYANAQAGIESSAMSLYEKDPVKAKEFLTNYSCMTAE
SAIDSWKKLGEFLIVKYNDGAVKKMAKDGTILRPETGHCAPLVRPGYPKEFLEELVKATG
GRYKMK