Protein Info for ABI39_RS17925 in Phocaeicola dorei CL03T12C01
Annotation: ABC transporter permease
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 98% identity to bvu:BVU_3575)Predicted SEED Role
"ABC-type multidrug transport system, permease component"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (390 amino acids)
>ABI39_RS17925 ABC transporter permease (Phocaeicola dorei CL03T12C01) MKESPFIAVLKRELDRMVSRRIYFASCIVLPLFSIFFMATIFGNGQMENLPVGIVDGDNT ATSREIIRMTEAVPTFRITRHYADEVEARADVQRKSIYGYLSIPSGFEAKVMDGKETALT YYYHYALMSVGSEIHGAFQSLLKSISVVPIVTHAVALGINQEEIESFLLPVTTQNHPLFN PDMDYSVYLTQPFFFVFLQVILLLVTTYSIGSEGKFHTSANWLAVADGNIWVAVTAKLLP YSFIFIVMSILANYVFFGVMHIPMDCGFWALNFTSALLVIATQALAVFLFSLFPALSIII SIVSMVGSLGATLGGVTFPVPHMFAPVYYASYLFPVRHFVEIGQNLLYGNYGYAYMWGNA ACLLLFLIPPLLLLPHLKRSLISRKYDDIE