Protein Info for ABI39_RS17500 in Phocaeicola dorei CL03T12C01

Annotation: gamma-glutamyl-gamma-aminobutyrate hydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 618 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF07722: Peptidase_C26" amino acids 55 to 258 (204 residues), 218.3 bits, see alignment E=1.7e-68 PF00117: GATase" amino acids 136 to 272 (137 residues), 66.4 bits, see alignment E=4.2e-22 PF01244: Peptidase_M19" amino acids 288 to 605 (318 residues), 343.6 bits, see alignment E=1.6e-106

Best Hits

KEGG orthology group: None (inferred from 95% identity to bvu:BVU_3434)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (618 amino acids)

>ABI39_RS17500 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein (Phocaeicola dorei CL03T12C01)
MKNKCLFVLLLALGCCHVQAQKSQKNPLPEALVQLNQKVDSELIPGIKRSPLIGISTDIS
PKRTAVNTAYVQSVILSGGIPYMIPVTDNVEILRQIVSQLDGIVFTGGEDIQPIYYGDLP
YEKLEEVSPARDTFDLMVLKMAADRNIPILGICRGLQLMNVAFGGTLYQDLPTQHSSSVK
HRQEESGTTPTHPISIIKESKLAEITGQEVLQVNTFHHQAIRKLAPGFKITAWAPDSIAE
AIEAYPIRQMIGVQFHPEIFTAAGDTTMHKLFKFLVNKADTFHLAKKIHSRILSIDTHTD
TPLWFKNGYSVGLRKDNMVSIQKMEEGKLDAQFLAAFIWQGKRDDVSSQKAVESTTLLIQ
SIYDEVAKYKDFCGIALTEKDLVRLKNEGKKAFFIGIENGYAIGKDLKNIKKYKQMGVNY
ITLCHSYDNDICHSSTHTEDATQGLTQFGREVVKEMNRLGIMIDISHASEGTFWDVIKYS
TQPIIASHSSSRTLCDHDRNLTDEQLRALAKNGGVAQLCLLDTYINKTPKAASVCDAVEH
LDHMIKVAGIDHVGIGTDFDGGGGLQGCKGDNDLINLTIKMIEKGYTEEDLRKIWGGNLL
RVMKQVQEAPLFSLKKRR