Protein Info for ABI39_RS17410 in Phocaeicola dorei CL03T12C01

Annotation: flavin reductase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 PF01613: Flavin_Reduct" amino acids 12 to 173 (162 residues), 104.2 bits, see alignment E=3.8e-34

Best Hits

Swiss-Prot: 31% identical to FLR_DESGG: Flavoredoxin (flr) from Desulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)

KEGG orthology group: None (inferred from 96% identity to bvu:BVU_3339)

Predicted SEED Role

"Flavoredoxin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>ABI39_RS17410 flavin reductase family protein (Phocaeicola dorei CL03T12C01)
MKQDWKPGTMIYPLPALLVSCGSTEEEYNIITVAWAGTICTNPAMCYISVRPERHSYPIL
KRNMEFVINLTTKEMAFATDWCGVRSGKDYNKFEEMKLTPGKAKIVNAPIIEESPLCIEC
RVKEIISLGSHDMFIADVVNVKADDKYLNGETGKFELSQANPLVYVHGGYFELGPKIGKF
GWSVEKNRMRTKEKA