Protein Info for ABI39_RS15280 in Phocaeicola dorei CL03T12C01

Annotation: patatin-like phospholipase domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 739 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01734: Patatin" amino acids 34 to 224 (191 residues), 109.9 bits, see alignment E=1.9e-35 PF19143: Omp85_2" amino acids 415 to 739 (325 residues), 84.6 bits, see alignment E=8.6e-28

Best Hits

KEGG orthology group: K07001, (no description) (inferred from 95% identity to bvu:BVU_3036)

Predicted SEED Role

"putative patatin-like phospholipase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (739 amino acids)

>ABI39_RS15280 patatin-like phospholipase domain-containing protein (Phocaeicola dorei CL03T12C01)
MKKMKFSTLLIAAGLLCISVHITAQPHSRKKVGIVLSGGGAKGMAHIGALKVIEKAGIPI
DYVVGTSMGSIIGGLYSIGYTPEQLDSMVRRQDWTFLLSDKIPRSEQNMAEREAAEKYVF
SLPFGKDAKTQAIGGLIKGQNLANLFSELTVGYHDSIDFNKLPIPFACVSENIVNGNEVN
FHKGVLATAMRASMAIPGVFTPVRLDSMVLVDGGVVNNYPVNVARAMGADIIIGVDVQSD
LKPANELNSAGSILGQLINLMGLQLYKKNLEETNAYIKVNVEGYSAASFTPNAVDTLIRR
GEEAALAQEGALMKLKQELGLDSTYMPKPLPSYPYSPSRKVYIKEITFDGLDEKDKRWLL
KRCDLKEDSEISIRRIEEATAILCSNLEYSSATYNLPEAPGGGYNLHFLLSKKYENKLNV
GIRFDSEETASLLINVTSNFRGKVPTTLSLTGRLGKRYAARIDYGFEPAPLKNIGLAYMF
QYNDINFYRYGDKSHNSTFRYHLGELSFSDVWYKNVRFAIGLRYELYDYDKFLYQEGNQG
FDVGTEHFFSYFAQMHYETFDKAYFPTKGISARASYSLYTDNFTGYDGHAPFSAIKGYCQ
GVVPVTRRFSILPAIYGRFLIGKDIPYSKLNAMGGDVQGRFLQQQLPFVGINNVELMRNT
LLIGSMKFRQRMGSVHYLTLTGNYALSASKLRYLLEQDTMFGCGIGYGLDSMFGPLEASL
NYANRANKVSMYVNLGFKF