Protein Info for ABI39_RS14655 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 52 to 1033 (982 residues), 905.5 bits, see alignment E=5.7e-276 PF13620: CarboxypepD_reg" amino acids 53 to 123 (71 residues), 44.6 bits, see alignment 2.3e-15 PF13715: CarbopepD_reg_2" amino acids 54 to 135 (82 residues), 78.9 bits, see alignment E=3.6e-26 PF07715: Plug" amino acids 142 to 248 (107 residues), 61.7 bits, see alignment E=1.3e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 224 to 254 (31 residues), 62.3 bits, see alignment (E = 2.8e-21)

Best Hits

KEGG orthology group: None (inferred from 79% identity to bth:BT_2362)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1033 amino acids)

>ABI39_RS14655 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKKCPKPLGYGIRRTPVVLGLSAALCMPAAFSYANVDNGMDRESVLSVMQGKTIKGQILD
ETGESMIGVSVLVKGTTIGTVTDFDGNYTLEVPSGKNILEISYIGYKTKEITIGNNSLIN
IKMEPDTQALDEVVVIGYGTVKKRDLTGAVASMKNEDVTVAPTSNVMEALQGKIAGMDIV
KSSGQVGEDVSILLRGSRSIYGSNEPLFIIDGIPGSYSQVNPSDIESVDVLKDASSTAIY
GSAGANGVVIITTKRGKEGKATVNFDAYYGFSGSPNYKHGMVGDEWVNYQREAYKYKNGD
YPSDMSALFGNQDYTDAYNAGKWIDWIDEASGNTATTQKYSLSVSGGSEKTKIFASTSYN
REEGLLSNDNLNKYSLRLNIDQEIFSWAKMGFTSNLTYQDRNQGVKNTFTKGLSSFPLGD
AYDQNGKINHEYITGQYSPLGDFIEDQYVNNTRSTYLNVSGYLELSPIKDFTFTSRINGT
LSDSRQGQYWGDQCNANRPSYAGSPHAAITNKNAWNYTWENILSYNTTIAKDHNIGGSVI
TSWNKNQNDSSLAAASGQMVDRWSFWRLASGASQHVESDFAQTQKMSFAVRFNYSYKGKY
LFTFSNRWDGVSQFSAGHKWDSFPAGAIAWRISDEPFMNVAKNWLNNLKLRVGYGITGNS
GGVDAYGTTTQAYVYIGNGLTLNGQNSSFTQYTGTYGSKDLGWEKSYNWNVGLDYGILNN
RVDGSIEWFKTTTKGLLFKRTLPITSGLTGWGSPLSIWQNIAETSNQGVEVTINSHNIKT
KDFSWNTTLSVTWSKEKIEKLPDGDLISENLFVGHSIKSIYGYKYTGIWGTNTPQDILDA
YGVKPGFIQIETLEKDGDGGVHKYSTNDRQVLGHTNPDWIVGLNNTFTYKNFDLSVFAMA
RYGQTINSDLLGYYTAEQSVTTNQLAGADYWTENNQGAYYPAPGTGSEQSTVISALRVRD
GSFIKVKNITLGYTFPVNISRKALMEKCRIYATAYNPFIYVKDKQLKGTDPETNGSDAFP
TFRQFVFGVNLTF